---
apiVersion: apps/v1
kind: Deployment
metadata:
  name: omero-server
spec:
  replicas: 1
  selector:
    matchLabels:
      app: omero-server
  template:
    metadata:
      labels:
        app: omero-server
    spec:
      securityContext:
        fsGroupChangePolicy: OnRootMismatch
        runAsNonRoot: true
        seccompProfile:
          type: RuntimeDefault
      containers:
      - name: omero-server
        image: openmicroscopy/omero-server
        imagePullPolicy: IfNotPresent
        env:
        - name: CONFIG_omero_db_user
          valueFrom:
            secretKeyRef:
              name: omero-db-app
              key: username
        - name: CONFIG_omero_db_pass
          valueFrom:
            secretKeyRef:
              name: omero-db-app
              key: password
        - name: CONFIG_omero_db_name
          value: omero
        - name: CONFIG_omero_db_host
          value: omero-rw
        - name: ROOTPASS
          value: omero-root-password
        securityContext:                                                          
          runAsUser: 1000 
          runAsGroup: 997
          allowPrivilegeEscalation: false
          capabilities:
            drop:
            - ALL
        resources:
          requests:
            cpu: 100m
            memory: 1Gi
          limits:
            cpu: 1
            memory: 2Gi
        ports:
        - containerPort: 4064
          name: ssl
        - containerPort: 4063
          name: plain
        volumeMounts:
        - name: omero-data
          mountPath: /OMERO
        - name: omero-logs
          mountPath: /opt/omero/server/OMERO.server/var
      volumes:
      - name: omero-data
        persistentVolumeClaim:
          claimName: pvc-omero-data
      - name: omero-logs
        emptryDir: {}